#define FORTRANOBJECT_C
#include "fortranobject.h"
#ifdef __cplusplus
extern "C" {
#endif
#include <stdlib.h>
#include <string.h>
/*
This file implements: FortranObject, array_from_pyobj, copy_ND_array
Author: Pearu Peterson <[email protected]>
$Revision: 1.52 $
$Date: 2005/07/11 07:44:20 $
*/
int
F2PyDict_SetItemString(PyObject *dict, char *name, PyObject *obj)
{
if (obj==NULL) {
fprintf(stderr, "Error loading %s\n", name);
if (PyErr_Occurred()) {
PyErr_Print();
PyErr_Clear();
}
return -1;
}
return PyDict_SetItemString(dict, name, obj);
}
/************************* FortranObject *******************************/
typedef PyObject *(*fortranfunc)(PyObject *,PyObject *,PyObject *,void *);
PyObject *
PyFortranObject_New(FortranDataDef* defs, f2py_void_func init) {
int i;
PyFortranObject *fp = NULL;
PyObject *v = NULL;
if (init!=NULL) { /* Initialize F90 module objects */
(*(init))();
}
fp = PyObject_New(PyFortranObject, &PyFortran_Type);
if (fp == NULL) {
return NULL;
}
if ((fp->dict = PyDict_New()) == NULL) {
Py_DECREF(fp);
return NULL;
}
fp->len = 0;
while (defs[fp->len].name != NULL) {
fp->len++;
}
if (fp->len == 0) {
goto fail;
}
fp->defs = defs;
for (i=0;i<fp->len;i++) {
if (fp->defs[i].rank == -1) { /* Is Fortran routine */
v = PyFortranObject_NewAsAttr(&(fp->defs[i]));
if (v==NULL) {
goto fail;
}
PyDict_SetItemString(fp->dict,fp->defs[i].name,v);
Py_XDECREF(v);
} else
if ((fp->defs[i].data)!=NULL) { /* Is Fortran variable or array (not allocatable) */
if (fp->defs[i].type == NPY_STRING) {
int n = fp->defs[i].rank-1;
v = PyArray_New(&PyArray_Type, n, fp->defs[i].dims.d,
NPY_STRING, NULL, fp->defs[i].data, fp->defs[i].dims.d[n],
NPY_ARRAY_FARRAY, NULL);
}
else {
v = PyArray_New(&PyArray_Type, fp->defs[i].rank, fp->defs[i].dims.d,
fp->defs[i].type, NULL, fp->defs[i].data, 0, NPY_ARRAY_FARRAY,
NULL);
}
if (v==NULL) {
goto fail;
}
PyDict_SetItemString(fp->dict,fp->defs[i].name,v);
Py_XDECREF(v);
}
}
return (PyObject *)fp;
fail:
Py_XDECREF(fp);
return NULL;
}
PyObject *
PyFortranObject_NewAsAttr(FortranDataDef* defs) { /* used for calling F90 module routines */
PyFortranObject *fp = NULL;
fp = PyObject_New(PyFortranObject, &PyFortran_Type);
if (fp == NULL) return NULL;
if ((fp->dict = PyDict_New())==NULL) {
PyObject_Del(fp);
return NULL;
}
fp->len = 1;
fp->defs = defs;
return (PyObject *)fp;
}
/* Fortran methods */
static void
fortran_dealloc(PyFortranObject *fp) {
Py_XDECREF(fp->dict);
PyObject_Del(fp);
}
/* Returns number of bytes consumed from buf, or -1 on error. */
static Py_ssize_t
format_def(char *buf, Py_ssize_t size, FortranDataDef def)
{
char *p = buf;
int i, n;
n = PyOS_snprintf(p, size, "array(%" NPY_INTP_FMT, def.dims.d[0]);
if (n < 0 || n >= size) {
return -1;
}
p += n;
size -= n;
for (i = 1; i < def.rank; i++) {
n = PyOS_snprintf(p, size, ",%" NPY_INTP_FMT, def.dims.d[i]);
if (n < 0 || n >= size) {
return -1;
}
p += n;
size -= n;
}
if (size <= 0) {
return -1;
}
*p++ = ')';
size--;
if (def.data == NULL) {
static const char notalloc[] = ", not allocated";
if ((size_t) size < sizeof(notalloc)) {
return -1;
}
memcpy(p, notalloc, sizeof(notalloc));
}
return p - buf;
}
static PyObject *
fortran_doc(FortranDataDef def)
{
char *buf, *p;
PyObject *s = NULL;
Py_ssize_t n, origsize, size = 100;
if (def.doc != NULL) {
size += strlen(def.doc);
}
origsize = size;
buf = p = (char *)PyMem_Malloc(size);
if (buf == NULL) {
return PyErr_NoMemory();
}
if (def.rank == -1) {
if (def.doc) {
n = strlen(def.doc);
if (n > size) {
goto fail;
}
memcpy(p, def.doc, n);
p += n;
size -= n;
}
else {
n = PyOS_snprintf(p, size, "%s - no docs available", def.name);
if (n < 0 || n >= size) {
goto fail;
}
p += n;
size -= n;
}
}
else {
PyArray_Descr *d = PyArray_DescrFromType(def.type);
n = PyOS_snprintf(p, size, "'%c'-", d->type);
Py_DECREF(d);
if (n < 0 || n >= size) {
goto fail;
}
p += n;
size -= n;
if (def.data == NULL) {
n = format_def(p, size, def) == -1;
if (n < 0) {
goto fail;
}
p += n;
size -= n;
}
else if (def.rank > 0) {
n = format_def(p, size, def);
if (n < 0) {
goto fail;
}
p += n;
size -= n;
}
else {
n = strlen("scalar");
if (size < n) {
goto fail;
}
memcpy(p, "scalar", n);
p += n;
size -= n;
}
}
if (size <= 1) {
goto fail;
}
*p++ = '\n';
size--;
/* p now points one beyond the last character of the string in buf */
s = PyUnicode_FromStringAndSize(buf, p - buf);
PyMem_Free(buf);
return s;
fail:
fprintf(stderr, "fortranobject.c: fortran_doc: len(p)=%zd>%zd=size:"
" too long docstring required, increase size\n",
p - buf, origsize);
PyMem_Free(buf);
return NULL;
}
static FortranDataDef *save_def; /* save pointer of an allocatable array */
static void set_data(char *d,npy_intp *f) { /* callback from Fortran */
if (*f) /* In fortran f=allocated(d) */
save_def->data = d;
else
save_def->data = NULL;
/* printf("set_data: d=%p,f=%d\n",d,*f); */
}
static PyObject *
fortran_getattr(PyFortranObject *fp, char *name) {
int i,j,k,flag;
if (fp->dict != NULL) {
PyObject *v = _PyDict_GetItemStringWithError(fp->dict, name);
if (v == NULL && PyErr_Occurred()) {
return NULL;
}
else if (v != NULL) {
Py_INCREF(v);
return v;
}
}
for (i=0,j=1;i<fp->len && (j=strcmp(name,fp->defs[i].name));i++);
if (j==0)
if (fp->defs[i].rank!=-1) { /* F90 allocatable array */
if (fp->defs[i].func==NULL) return NULL;
for(k=0;k<fp->defs[i].rank;++k)
fp->defs[i].dims.d[k]=-1;
save_def = &fp->defs[i];
(*(fp->defs[i].func))(&fp->defs[i].rank,fp->defs[i].dims.d,set_data,&flag);
if (flag==2)
k = fp->defs[i].rank + 1;
else
k = fp->defs[i].rank;
if (fp->defs[i].data !=NULL) { /* array is allocated */
PyObject *v = PyArray_New(&PyArray_Type, k, fp->defs[i].dims.d,
fp->defs[i].type, NULL, fp->defs[i].data, 0, NPY_ARRAY_FARRAY,
NULL);
if (v==NULL) return NULL;
/* Py_INCREF(v); */
return v;
} else { /* array is not allocated */
Py_RETURN_NONE;
}
}
if (strcmp(name,"__dict__")==0) {
Py_INCREF(fp->dict);
return fp->dict;
}
if (strcmp(name,"__doc__")==0) {
PyObject *s = PyUnicode_FromString(""), *s2, *s3;
for (i=0;i<fp->len;i++) {
s2 = fortran_doc(fp->defs[i]);
s3 = PyUnicode_Concat(s, s2);
Py_DECREF(s2);
Py_DECREF(s);
s = s3;
}
if (PyDict_SetItemString(fp->dict, name, s))
return NULL;
return s;
}
if ((strcmp(name,"_cpointer")==0) && (fp->len==1)) {
PyObject *cobj = F2PyCapsule_FromVoidPtr((void *)(fp->defs[0].data),NULL);
if (PyDict_SetItemString(fp->dict, name, cobj))
return NULL;
return cobj;
}
PyObject *str, *ret;
str = PyUnicode_FromString(name);
ret = PyObject_GenericGetAttr((PyObject *)fp, str);
Py_DECREF(str);
return ret;
}
static int
fortran_setattr(PyFortranObject *fp, char *name, PyObject *v) {
int i,j,flag;
PyArrayObject *arr = NULL;
for (i=0,j=1;i<fp->len && (j=strcmp(name,fp->defs[i].name));i++);
if (j==0) {
if (fp->defs[i].rank==-1) {
PyErr_SetString(PyExc_AttributeError,"over-writing fortran routine");
return -1;
}
if (fp->defs[i].func!=NULL) { /* is allocatable array */
npy_intp dims[F2PY_MAX_DIMS];
int k;
save_def = &fp->defs[i];
if (v!=Py_None) { /* set new value (reallocate if needed --
see f2py generated code for more
details ) */
for(k=0;k<fp->defs[i].rank;k++) dims[k]=-1;
if ((arr = array_from_pyobj(fp->defs[i].type,dims,fp->defs[i].rank,F2PY_INTENT_IN,v))==NULL)
return -1;
(*(fp->defs[i].func))(&fp->defs[i].rank,PyArray_DIMS(arr),set_data,&flag);
} else { /* deallocate */
for(k=0;k<fp->defs[i].rank;k++) dims[k]=0;
(*(fp->defs[i].func))(&fp->defs[i].rank,dims,set_data,&flag);
for(k=0;k<fp->defs[i].rank;k++) dims[k]=-1;
}
memcpy(fp->defs[i].dims.d,dims,fp->defs[i].rank*sizeof(npy_intp));
} else { /* not allocatable array */
if ((arr = array_from_pyobj(fp->defs[i].type,fp->defs[i].dims.d,fp->defs[i].rank,F2PY_INTENT_IN,v))==NULL)
return -1;
}
if (fp->defs[i].data!=NULL) { /* copy Python object to Fortran array */
npy_intp s = PyArray_MultiplyList(fp->defs[i].dims.d,PyArray_NDIM(arr));
if (s==-1)
s = PyArray_MultiplyList(PyArray_DIMS(arr),PyArray_NDIM(arr));
if (s<0 ||
(memcpy(fp->defs[i].data,PyArray_DATA(arr),s*PyArray_ITEMSIZE(arr)))==NULL) {
if ((PyObject*)arr!=v) {
Py_DECREF(arr);
}
return -1;
}
if ((PyObject*)arr!=v) {
Py_DECREF(arr);
}
} else return (fp->defs[i].func==NULL?-1:0);
return 0; /* successful */
}
if (fp->dict == NULL) {
fp->dict = PyDict_New();
if (fp->dict == NULL)
return -1;
}
if (v == NULL) {
int rv = PyDict_DelItemString(fp->dict, name);
if (rv < 0)
PyErr_SetString(PyExc_AttributeError,"delete non-existing fortran attribute");
return rv;
}
else
return PyDict_SetItemString(fp->dict, name, v);
}
static PyObject*
fortran_call(PyFortranObject *fp, PyObject *arg, PyObject *kw) {
int i = 0;
/* printf("fortran call
name=%s,func=%p,data=%p,%p\n",fp->defs[i].name,
fp->defs[i].func,fp->defs[i].data,&fp->defs[i].data); */
if (fp->defs[i].rank==-1) {/* is Fortran routine */
if (fp->defs[i].func==NULL) {
PyErr_Format(PyExc_RuntimeError, "no function to call");
return NULL;
}
else if (fp->defs[i].data==NULL)
/* dummy routine */
return (*((fortranfunc)(fp->defs[i].func)))((PyObject *)fp,arg,kw,NULL);
else
return (*((fortranfunc)(fp->defs[i].func)))((PyObject *)fp,arg,kw,
(void *)fp->defs[i].data);
}
PyErr_Format(PyExc_TypeError, "this fortran object is not callable");
return NULL;
}
static PyObject *
fortran_repr(PyFortranObject *fp)
{
PyObject *name = NULL, *repr = NULL;
name = PyObject_GetAttrString((PyObject *)fp, "__name__");
PyErr_Clear();
if (name != NULL && PyUnicode_Check(name)) {
repr = PyUnicode_FromFormat("<fortran %U>", name);
}
else {
repr = PyUnicode_FromString("<fortran object>");
}
Py_XDECREF(name);
return repr;
}
PyTypeObject PyFortran_Type = {
PyVarObject_HEAD_INIT(NULL, 0)
.tp_name ="fortran",
.tp_basicsize = sizeof(PyFortranObject),
.tp_dealloc = (destructor)fortran_dealloc,
.tp_getattr = (getattrfunc)fortran_getattr,
.tp_setattr = (setattrfunc)fortran_setattr,
.tp_repr = (reprfunc)fortran_repr,
.tp_call = (ternaryfunc)fortran_call,
};
/************************* f2py_report_atexit *******************************/
#ifdef F2PY_REPORT_ATEXIT
static int passed_time = 0;
static int passed_counter = 0;
static int passed_call_time = 0;
static struct timeb start_time;
static struct timeb stop_time;
static struct timeb start_call_time;
static struct timeb stop_call_time;
static int cb_passed_time = 0;
static int cb_passed_counter = 0;
static int cb_passed_call_time = 0;
static struct timeb cb_start_time;
static struct timeb cb_stop_time;
static struct timeb cb_start_call_time;
static struct timeb cb_stop_call_time;
extern void f2py_start_clock(void) { ftime(&start_time); }
extern
void f2py_start_call_clock(void) {
f2py_stop_clock();
ftime(&start_call_time);
}
extern
void f2py_stop_clock(void) {
ftime(&stop_time);
passed_time += 1000*(stop_time.time - start_time.time);
passed_time += stop_time.millitm - start_time.millitm;
}
extern
void f2py_stop_call_clock(void) {
ftime(&stop_call_time);
passed_call_time += 1000*(stop_call_time.time - start_call_time.time);
passed_call_time += stop_call_time.millitm - start_call_time.millitm;
passed_counter += 1;
f2py_start_clock();
}
extern void f2py_cb_start_clock(void) { ftime(&cb_start_time); }
extern
void f2py_cb_start_call_clock(void) {
f2py_cb_stop_clock();
ftime(&cb_start_call_time);
}
extern
void f2py_cb_stop_clock(void) {
ftime(&cb_stop_time);
cb_passed_time += 1000*(cb_stop_time.time - cb_start_time.time);
cb_passed_time += cb_stop_time.millitm - cb_start_time.millitm;
}
extern
void f2py_cb_stop_call_clock(void) {
ftime(&cb_stop_call_time);
cb_passed_call_time += 1000*(cb_stop_call_time.time - cb_start_call_time.time);
cb_passed_call_time += cb_stop_call_time.millitm - cb_start_call_time.millitm;
cb_passed_counter += 1;
f2py_cb_start_clock();
}
static int f2py_report_on_exit_been_here = 0;
extern
void f2py_report_on_exit(int exit_flag,void *name) {
if (f2py_report_on_exit_been_here) {
fprintf(stderr," %s\n",(char*)name);
return;
}
f2py_report_on_exit_been_here = 1;
fprintf(stderr," /-----------------------\\\n");
fprintf(stderr," < F2PY performance report >\n");
fprintf(stderr," \\-----------------------/\n");
fprintf(stderr,"Overall time spent in ...\n");
fprintf(stderr,"(a) wrapped (Fortran/C) functions : %8d msec\n",
passed_call_time);
fprintf(stderr,"(b) f2py interface, %6d calls : %8d msec\n",
passed_counter,passed_time);
fprintf(stderr,"(c) call-back (Python) functions : %8d msec\n",
cb_passed_call_time);
fprintf(stderr,"(d) f2py call-back interface, %6d calls : %8d msec\n",
cb_passed_counter,cb_passed_time);
fprintf(stderr,"(e) wrapped (Fortran/C) functions (actual) : %8d msec\n\n",
passed_call_time-cb_passed_call_time-cb_passed_time);
fprintf(stderr,"Use -DF2PY_REPORT_ATEXIT_DISABLE to disable this message.\n");
fprintf(stderr,"Exit status: %d\n",exit_flag);
fprintf(stderr,"Modules : %s\n",(char*)name);
}
#endif
/********************** report on array copy ****************************/
#ifdef F2PY_REPORT_ON_ARRAY_COPY
static void f2py_report_on_array_copy(PyArrayObject* arr) {
const npy_intp arr_size = PyArray_Size((PyObject *)arr);
if (arr_size>F2PY_REPORT_ON_ARRAY_COPY) {
fprintf(stderr,"copied an array: size=%ld, elsize=%"NPY_INTP_FMT"\n",
arr_size, (npy_intp)PyArray_ITEMSIZE(arr));
}
}
static void f2py_report_on_array_copy_fromany(void) {
fprintf(stderr,"created an array from object\n");
}
#define F2PY_REPORT_ON_ARRAY_COPY_FROMARR f2py_report_on_array_copy((PyArrayObject *)arr)
#define F2PY_REPORT_ON_ARRAY_COPY_FROMANY f2py_report_on_array_copy_fromany()
#else
#define F2PY_REPORT_ON_ARRAY_COPY_FROMARR
#define F2PY_REPORT_ON_ARRAY_COPY_FROMANY
#endif
/************************* array_from_obj *******************************/
/*
* File: array_from_pyobj.c
*
* Description:
* ------------
* Provides array_from_pyobj function that returns a contiguous array
* object with the given dimensions and required storage order, either
* in row-major (C) or column-major (Fortran) order. The function
* array_from_pyobj is very flexible about its Python object argument
* that can be any number, list, tuple, or array.
*
* array_from_pyobj is used in f2py generated Python extension
* modules.
*
* Author: Pearu Peterson <[email protected]>
* Created: 13-16 January 2002
* $Id: fortranobject.c,v 1.52 2005/07/11 07:44:20 pearu Exp $
*/
static int check_and_fix_dimensions(const PyArrayObject* arr,
const int rank,
npy_intp *dims);
static int
count_negative_dimensions(const int rank,
const npy_intp *dims) {
int i=0,r=0;
while (i<rank) {
if (dims[i] < 0) ++r;
++i;
}
return r;
}
#ifdef DEBUG_COPY_ND_ARRAY
void dump_dims(int rank, npy_intp const* dims) {
int i;
printf("[");
for(i=0;i<rank;++i) {
printf("%3" NPY_INTP_FMT, dims[i]);
}
printf("]\n");
}
void dump_attrs(const PyArrayObject* obj) {
const PyArrayObject_fields *arr = (const PyArrayObject_fields*) obj;
int rank = PyArray_NDIM(arr);
npy_intp size = PyArray_Size((PyObject *)arr);
printf("\trank = %d, flags = %d, size = %" NPY_INTP_FMT "\n",
rank,arr->flags,size);
printf("\tstrides = ");
dump_dims(rank,arr->strides);
printf("\tdimensions = ");
dump_dims(rank,arr->dimensions);
}
#endif
#define SWAPTYPE(a,b,t) {t c; c = (a); (a) = (b); (b) = c; }
static int swap_arrays(PyArrayObject* obj1, PyArrayObject* obj2) {
PyArrayObject_fields *arr1 = (PyArrayObject_fields*) obj1,
*arr2 = (PyArrayObject_fields*) obj2;
SWAPTYPE(arr1->data,arr2->data,char*);
SWAPTYPE(arr1->nd,arr2->nd,int);
SWAPTYPE(arr1->dimensions,arr2->dimensions,npy_intp*);
SWAPTYPE(arr1->strides,arr2->strides,npy_intp*);
SWAPTYPE(arr1->base,arr2->base,PyObject*);
SWAPTYPE(arr1->descr,arr2->descr,PyArray_Descr*);
SWAPTYPE(arr1->flags,arr2->flags,int);
/* SWAPTYPE(arr1->weakreflist,arr2->weakreflist,PyObject*); */
return 0;
}
#define ARRAY_ISCOMPATIBLE(arr,type_num) \
( (PyArray_ISINTEGER(arr) && PyTypeNum_ISINTEGER(type_num)) \
||(PyArray_ISFLOAT(arr) && PyTypeNum_ISFLOAT(type_num)) \
||(PyArray_ISCOMPLEX(arr) && PyTypeNum_ISCOMPLEX(type_num)) \
||(PyArray_ISBOOL(arr) && PyTypeNum_ISBOOL(type_num)) \
)
extern
PyArrayObject* array_from_pyobj(const int type_num,
npy_intp *dims,
const int rank,
const int intent,
PyObject *obj) {
/*
* Note about reference counting
* -----------------------------
* If the caller returns the array to Python, it must be done with
* Py_BuildValue("N",arr).
* Otherwise, if obj!=arr then the caller must call Py_DECREF(arr).
*
* Note on intent(cache,out,..)
* ---------------------
* Don't expect correct data when returning intent(cache) array.
*
*/
char mess[200];
PyArrayObject *arr = NULL;
PyArray_Descr *descr;
char typechar;
int elsize;
if ((intent & F2PY_INTENT_HIDE)
|| ((intent & F2PY_INTENT_CACHE) && (obj==Py_None))
|| ((intent & F2PY_OPTIONAL) && (obj==Py_None))
) {
/* intent(cache), optional, intent(hide) */
if (count_negative_dimensions(rank,dims) > 0) {
int i;
strcpy(mess, "failed to create intent(cache|hide)|optional array"
"-- must have defined dimensions but got (");
for(i=0;i<rank;++i)
sprintf(mess+strlen(mess),"%" NPY_INTP_FMT ",",dims[i]);
strcat(mess, ")");
PyErr_SetString(PyExc_ValueError,mess);
return NULL;
}
arr = (PyArrayObject *)
PyArray_New(&PyArray_Type, rank, dims, type_num,
NULL,NULL,1,
!(intent&F2PY_INTENT_C),
NULL);
if (arr==NULL) return NULL;
if (!(intent & F2PY_INTENT_CACHE))
PyArray_FILLWBYTE(arr, 0);
return arr;
}
descr = PyArray_DescrFromType(type_num);
/* compatibility with NPY_CHAR */
if (type_num == NPY_STRING) {
PyArray_DESCR_REPLACE(descr);
if (descr == NULL) {
return NULL;
}
descr->elsize = 1;
descr->type = NPY_CHARLTR;
}
elsize = descr->elsize;
typechar = descr->type;
Py_DECREF(descr);
if (PyArray_Check(obj)) {
arr = (PyArrayObject *)obj;
if (intent & F2PY_INTENT_CACHE) {
/* intent(cache) */
if (PyArray_ISONESEGMENT(arr)
&& PyArray_ITEMSIZE(arr)>=elsize) {
if (check_and_fix_dimensions(arr, rank, dims)) {
return NULL;
}
if (intent & F2PY_INTENT_OUT)
Py_INCREF(arr);
return arr;
}
strcpy(mess, "failed to initialize intent(cache) array");
if (!PyArray_ISONESEGMENT(arr))
strcat(mess, " -- input must be in one segment");
if (PyArray_ITEMSIZE(arr)<elsize)
sprintf(mess+strlen(mess),
" -- expected at least elsize=%d but got %" NPY_INTP_FMT,
elsize,
(npy_intp)PyArray_ITEMSIZE(arr)
);
PyErr_SetString(PyExc_ValueError,mess);
return NULL;
}
/* here we have always intent(in) or intent(inout) or intent(inplace) */
if (check_and_fix_dimensions(arr, rank, dims)) {
return NULL;
}
/*
printf("intent alignment=%d\n", F2PY_GET_ALIGNMENT(intent));
printf("alignment check=%d\n", F2PY_CHECK_ALIGNMENT(arr, intent));
int i;
for (i=1;i<=16;i++)
printf("i=%d isaligned=%d\n", i, ARRAY_ISALIGNED(arr, i));
*/
if ((! (intent & F2PY_INTENT_COPY))
&& PyArray_ITEMSIZE(arr)==elsize
&& ARRAY_ISCOMPATIBLE(arr,type_num)
&& F2PY_CHECK_ALIGNMENT(arr, intent)
) {
if ((intent & F2PY_INTENT_C)?PyArray_ISCARRAY(arr):PyArray_ISFARRAY(arr)) {
if ((intent & F2PY_INTENT_OUT)) {
Py_INCREF(arr);
}
/* Returning input array */
return arr;
}
}
if (intent & F2PY_INTENT_INOUT) {
strcpy(mess, "failed to initialize intent(inout) array");
if ((intent & F2PY_INTENT_C) && !PyArray_ISCARRAY(arr))
strcat(mess, " -- input not contiguous");
if (!(intent & F2PY_INTENT_C) && !PyArray_ISFARRAY(arr))
strcat(mess, " -- input not fortran contiguous");
if (PyArray_ITEMSIZE(arr)!=elsize)
sprintf(mess+strlen(mess),
" -- expected elsize=%d but got %" NPY_INTP_FMT,
elsize,
(npy_intp)PyArray_ITEMSIZE(arr)
);
if (!(ARRAY_ISCOMPATIBLE(arr,type_num)))
sprintf(mess+strlen(mess)," -- input '%c' not compatible to '%c'",
PyArray_DESCR(arr)->type,typechar);
if (!(F2PY_CHECK_ALIGNMENT(arr, intent)))
sprintf(mess+strlen(mess)," -- input not %d-aligned", F2PY_GET_ALIGNMENT(intent));
PyErr_SetString(PyExc_ValueError,mess);
return NULL;
}
/* here we have always intent(in) or intent(inplace) */
{
PyArrayObject * retarr;
retarr = (PyArrayObject *) \
PyArray_New(&PyArray_Type, PyArray_NDIM(arr), PyArray_DIMS(arr), type_num,
NULL,NULL,1,
!(intent&F2PY_INTENT_C),
NULL);
if (retarr==NULL)
return NULL;
F2PY_REPORT_ON_ARRAY_COPY_FROMARR;
if (PyArray_CopyInto(retarr, arr)) {
Py_DECREF(retarr);
return NULL;
}
if (intent & F2PY_INTENT_INPLACE) {
if (swap_arrays(arr,retarr))
return NULL; /* XXX: set exception */
Py_XDECREF(retarr);
if (intent & F2PY_INTENT_OUT)
Py_INCREF(arr);
} else {
arr = retarr;
}
}
return arr;
}
if ((intent & F2PY_INTENT_INOUT) ||
(intent & F2PY_INTENT_INPLACE) ||
(intent & F2PY_INTENT_CACHE)) {
PyErr_Format(PyExc_TypeError,
"failed to initialize intent(inout|inplace|cache) "
"array, input '%s' object is not an array",
Py_TYPE(obj)->tp_name);
return NULL;
}
{
PyArray_Descr * descr = PyArray_DescrFromType(type_num);
/* compatibility with NPY_CHAR */
if (type_num == NPY_STRING) {
PyArray_DESCR_REPLACE(descr);
if (descr == NULL) {
return NULL;
}
descr->elsize = 1;
descr->type = NPY_CHARLTR;
}
F2PY_REPORT_ON_ARRAY_COPY_FROMANY;
arr = (PyArrayObject *) \
PyArray_FromAny(obj, descr, 0,0,
((intent & F2PY_INTENT_C)?NPY_ARRAY_CARRAY:NPY_ARRAY_FARRAY) \
| NPY_ARRAY_FORCECAST, NULL);
if (arr==NULL)
return NULL;
if (check_and_fix_dimensions(arr, rank, dims)) {
return NULL;
}
return arr;
}
}
/*****************************************/
/* Helper functions for array_from_pyobj */
/*****************************************/
static
int check_and_fix_dimensions(const PyArrayObject* arr, const int rank, npy_intp *dims)
{
/*
* This function fills in blanks (that are -1's) in dims list using
* the dimensions from arr. It also checks that non-blank dims will
* match with the corresponding values in arr dimensions.
*
* Returns 0 if the function is successful.
*
* If an error condition is detected, an exception is set and 1 is returned.
*/
const npy_intp arr_size = (PyArray_NDIM(arr))?PyArray_Size((PyObject *)arr):1;
#ifdef DEBUG_COPY_ND_ARRAY
dump_attrs(arr);
printf("check_and_fix_dimensions:init: dims=");
dump_dims(rank,dims);
#endif
if (rank > PyArray_NDIM(arr)) { /* [1,2] -> [[1],[2]]; 1 -> [[1]] */
npy_intp new_size = 1;
int free_axe = -1;
int i;
npy_intp d;
/* Fill dims where -1 or 0; check dimensions; calc new_size; */
for(i=0;i<PyArray_NDIM(arr);++i) {
d = PyArray_DIM(arr,i);
if (dims[i] >= 0) {
if (d>1 && dims[i]!=d) {
PyErr_Format(PyExc_ValueError,
"%d-th dimension must be fixed to %"
NPY_INTP_FMT " but got %" NPY_INTP_FMT "\n",
i, dims[i], d);
return 1;
}
if (!dims[i]) dims[i] = 1;
} else {
dims[i] = d ? d : 1;
}
new_size *= dims[i];
}
for(i=PyArray_NDIM(arr);i<rank;++i)
if (dims[i]>1) {
PyErr_Format(PyExc_ValueError,
"%d-th dimension must be %" NPY_INTP_FMT
" but got 0 (not defined).\n",
i, dims[i]);
return 1;
} else if (free_axe<0)
free_axe = i;
else
dims[i] = 1;
if (free_axe>=0) {
dims[free_axe] = arr_size/new_size;
new_size *= dims[free_axe];
}
if (new_size != arr_size) {
PyErr_Format(PyExc_ValueError,
"unexpected array size: new_size=%" NPY_INTP_FMT
", got array with arr_size=%" NPY_INTP_FMT
" (maybe too many free indices)\n",
new_size, arr_size);
return 1;
}
} else if (rank==PyArray_NDIM(arr)) {
npy_intp new_size = 1;
int i;
npy_intp d;
for (i=0; i<rank; ++i) {
d = PyArray_DIM(arr,i);
if (dims[i]>=0) {
if (d > 1 && d!=dims[i]) {
PyErr_Format(PyExc_ValueError,
"%d-th dimension must be fixed to %"
NPY_INTP_FMT " but got %" NPY_INTP_FMT "\n",
i, dims[i], d);
return 1;
}
if (!dims[i]) dims[i] = 1;
} else dims[i] = d;
new_size *= dims[i];
}
if (new_size != arr_size) {
PyErr_Format(PyExc_ValueError,
"unexpected array size: new_size=%" NPY_INTP_FMT
", got array with arr_size=%" NPY_INTP_FMT "\n",
new_size, arr_size);
return 1;
}
} else { /* [[1,2]] -> [[1],[2]] */
int i,j;
npy_intp d;
int effrank;
npy_intp size;
for (i=0,effrank=0;i<PyArray_NDIM(arr);++i)
if (PyArray_DIM(arr,i)>1) ++effrank;
if (dims[rank-1]>=0)
if (effrank>rank) {
PyErr_Format(PyExc_ValueError,
"too many axes: %d (effrank=%d), "
"expected rank=%d\n",
PyArray_NDIM(arr), effrank, rank);
return 1;
}
for (i=0,j=0;i<rank;++i) {
while (j<PyArray_NDIM(arr) && PyArray_DIM(arr,j)<2) ++j;
if (j>=PyArray_NDIM(arr)) d = 1;
else d = PyArray_DIM(arr,j++);
if (dims[i]>=0) {
if (d>1 && d!=dims[i]) {
PyErr_Format(PyExc_ValueError,
"%d-th dimension must be fixed to %"
NPY_INTP_FMT " but got %" NPY_INTP_FMT
" (real index=%d)\n",
i, dims[i], d, j-1);
return 1;
}
if (!dims[i]) dims[i] = 1;
} else
dims[i] = d;
}
for (i=rank;i<PyArray_NDIM(arr);++i) { /* [[1,2],[3,4]] -> [1,2,3,4] */
while (j<PyArray_NDIM(arr) && PyArray_DIM(arr,j)<2) ++j;
if (j>=PyArray_NDIM(arr)) d = 1;
else d = PyArray_DIM(arr,j++);
dims[rank-1] *= d;
}
for (i=0,size=1;i<rank;++i) size *= dims[i];
if (size != arr_size) {
char msg[200];
int len;
snprintf(msg, sizeof(msg),
"unexpected array size: size=%" NPY_INTP_FMT
", arr_size=%" NPY_INTP_FMT
", rank=%d, effrank=%d, arr.nd=%d, dims=[",
size, arr_size, rank, effrank, PyArray_NDIM(arr));
for (i = 0; i < rank; ++i) {
len = strlen(msg);
snprintf(msg + len, sizeof(msg) - len,
" %" NPY_INTP_FMT, dims[i]);
}
len = strlen(msg);
snprintf(msg + len, sizeof(msg) - len, " ], arr.dims=[");
for (i = 0; i < PyArray_NDIM(arr); ++i) {
len = strlen(msg);
snprintf(msg + len, sizeof(msg) - len,
" %" NPY_INTP_FMT, PyArray_DIM(arr, i));
}
len = strlen(msg);
snprintf(msg + len, sizeof(msg) - len, " ]\n");
PyErr_SetString(PyExc_ValueError, msg);
return 1;
}
}
#ifdef DEBUG_COPY_ND_ARRAY
printf("check_and_fix_dimensions:end: dims=");
dump_dims(rank,dims);
#endif
return 0;
}
/* End of file: array_from_pyobj.c */
/************************* copy_ND_array *******************************/
extern
int copy_ND_array(const PyArrayObject *arr, PyArrayObject *out)
{
F2PY_REPORT_ON_ARRAY_COPY_FROMARR;
return PyArray_CopyInto(out, (PyArrayObject *)arr);
}
/*********************************************/
/* Compatibility functions for Python >= 3.0 */
/*********************************************/
PyObject *
F2PyCapsule_FromVoidPtr(void *ptr, void (*dtor)(PyObject *))
{
PyObject *ret = PyCapsule_New(ptr, NULL, dtor);
if (ret == NULL) {
PyErr_Clear();
}
return ret;
}
void *
F2PyCapsule_AsVoidPtr(PyObject *obj)
{
void *ret = PyCapsule_GetPointer(obj, NULL);
if (ret == NULL) {
PyErr_Clear();
}
return ret;
}
int
F2PyCapsule_Check(PyObject *ptr)
{
return PyCapsule_CheckExact(ptr);
}
#ifdef __cplusplus
}
#endif
/************************* EOF fortranobject.c *******************************/